ProMatch has been tested on two benchmarks for protein structure alignment quality: SISY98 and RIPC. XML formated alignments between protein structures in these two datasets, computed by ProMatch, can be downloaded below.
Andreeva,A., Prlic,A., Hubbard,T.J.P. and Murzin,A.G. (2007) SISYPHUS - structural alignments for proteins with non-trivial relationships. Nucleic Acids Res., 35, D253- D259.
Berbalk,C., Schwaiger,C.S. and Lackner,P. (2009) Accuracy analysis of multiple structure alignments. Protein Sci., 18, 2027-2035.